YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68545092, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLRWWQRLL PRSAFSQTVM LIGCLLLINQ LFSYVSVALY VIKPSYQQIN QLIARQINFL  60
   61 FTEEAVIGRE YLSLVDALNA KVGDGSMHVF NQKQAREAGI DSATYYGLLS NQMSEYLGGS 120
  121 AEVRITQGET VQIWIRPPQA PSVWIRVPLS SFNELEMSLL TLYLMVIGAL SVAGGWLFAR 180
  181 RQSKPLKALQ KAAINVSRGE YPEAIPPAGS SEIVEVTHAF NQMAHSMRML EQDRALMMAG 240
  241 ISHDLRTPLT RIRLASEMMV DEDAYLRDGI IADIDDMNAI INQFIAYIRQ DQEAVWEKAD 300
  301 INQLVSEYAQ AESKRDGVIE LALGPCIGIP VQVIAIKRVL GNLVENAFRY GRGWIRISTR 360
  361 MEKSSLVLTV EDNGPGIPVD QIPKLFQPFT QGDMARGSLG SGLGLAIIKR IVDRHQGKVK 420
  421 LSNRVEGGLK AEVFLPLE

Type	Start	End	Confidence
Cytoplasmic	1	18	0.56
Transmembrane Helix	19	39	0.59
Non-Cytoplasmic	40	158	0.96
Transmembrane Helix	159	179	0.93
Cytoplasmic	180	438	0.91