YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA_SHEB5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	34	0.90
Non-Cytoplasmic	35	58	0.88
Transmembrane Helix	59	77	0.95
Cytoplasmic	78	93	0.79
Transmembrane Helix	94	115	0.88
Non-Cytoplasmic	116	123	0.87
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	153	0.81
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	178	0.73
Transmembrane Helix	179	198	0.73
Cytoplasmic	199	204	0.52
Transmembrane Helix	205	220	0.64
Non-Cytoplasmic	221	221	0.29
Transmembrane Helix	222	241	0.75
Cytoplasmic	242	254	0.50
Transmembrane Helix	255	277	0.86
Non-Cytoplasmic	278	287	0.48
Transmembrane Helix	288	312	0.84
Cytoplasmic	313	327	0.50
Transmembrane Helix	328	350	0.91
Non-Cytoplasmic	351	359	0.50
Transmembrane Helix	360	381	0.92
Cytoplasmic	382	389	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAIRNFLS QESAGGILLL VAVALAMLMA NSPLSGLYQG FLGTDVQVKI GELDIHKPLI  60
   61 LWINDGLMAV FFLLIGLEVK RELLEGALSS VAQASLPTFA AIGGMLVPAG VYLLFNYGDP 120
  121 VTQAGWAIPA ATDIAFALGI MALLGSRVPV SLKVFLLALA IIDDLGVIVI IALFYSTDLS 180
  181 TISLVIASLA IAGLVGLNRK GVTSLLPYSI LGLILWVAVL KSGVHATLAG VIIAFCIPLR 240
  241 AKDGSSPSEG LEHSLHPWST FFILPVFAFA NAGVYVGNMN LETLISPVPV GIALGLMLGK 300
  301 PIGVMVFSYI AVKLKLAQLP DGVGWKQIAP VAAMCGIGFT MSMFIASLAF EHADPMYGDL 360
  361 ARLGTLIGSI MAALVGYFWL SKVLPNKGV