YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68518046, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSFPNIDP VIVSFGPFNL FGQTFEPALR WYGFTYLVGF VAAMWLLNRQ ADRSKGVWSR  60
   61 EQVSDLLFYG FLGVILGGRV GYVLFYHFDY FLASPMYLFK ISEGGMSFHG GLMGVIAAMI 120
  121 YIAWKQKRTF FAVADMVAPV VPIGLGAGRI GNFINGELWG RTTDLPWGMV FPTGGPDPRH 180
  181 PSQLYQFALE GVALFLLLYW FSKRTDKVGA VSGMFLVGYG IFRIMVETVR QPDAQLGLYW 240
  241 GLMTMGQILS IPMVLIGLYL IFRKQGKQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.91
Transmembrane Helix	28	47	0.95
Cytoplasmic	48	65	0.93
Transmembrane Helix	66	86	0.94
Non-Cytoplasmic	87	104	0.88
Transmembrane Helix	105	124	0.94
Cytoplasmic	125	130	0.88
Transmembrane Helix	131	151	0.91
Non-Cytoplasmic	152	181	0.93
Transmembrane Helix	182	201	0.92
Cytoplasmic	202	207	0.90
Transmembrane Helix	208	226	0.94
Non-Cytoplasmic	227	237	0.85
Transmembrane Helix	238	262	0.88
Cytoplasmic	263	269	0.96