YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68518199, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLITTAVL AASFSLTAGM ASAADAPKSI DQLLQQVKVE RAAEGKINSK REQEFQAERG  60
   61 DKAALLKREK DALAAEKQRG KDLNQAFLDN ERKIAQLEED LKTAQGDLGE MFGVVKGEAG 120
  121 DFAGKLASSN ISAQYPNRDK FIADLGARKQ LPKIEELEQF WQEQLFEMAQ SGKVVKFEGS 180
  181 VTGIDGSVKT TTIHRIGSYN LTADGKYVVY NSELGLIQQL SQQPEGYQVS AVADWEKITS 240
  241 GTAPFYVDPA RGVLLNIFTN KASFEDRLEA GGTIGYIIIA LLALGLLISI ERLVTMTIIG 300
  301 ARVNSQRKNV DKPGNNALGR ILKVYQENKD VDVETLELKL DEAILKETPA LEARISIIKV 360
  361 LAAIAPMMGL LGTVTGMIAT FQSIQLFGTG DPKLMAGGIS MALITTVQGL VAALPLMLMH 420
  421 AVVVARSKSI VQILEEQSAG IIAAHAEKRA D

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	271	0.99
Transmembrane Helix	272	290	0.94
Cytoplasmic	291	359	0.94
Transmembrane Helix	360	381	0.91
Non-Cytoplasmic	382	398	0.83
Transmembrane Helix	399	423	0.85
Cytoplasmic	424	451	0.98