YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73623533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTPPAEPD LEPKMNWASF YAVISGVNRH STGIGRIWLS VLFIFRILVL VVAAESVWGD  60
   61 EKAHFICNTQ QPGCNSVCYD HFFPISHIRL WALQLIMVST PALLVAMHIA HRRHIDKKLY 120
  121 RQAGRTSPKD LEAIKNQKMK ITGALWWTYM ISLLFRVLFE SAFMYLFYMI YPGYKMFRLV 180
  181 KCDSYPCPNI VDCFVSRPTE KTVFTIFMLA VSGVCILLNI AEIVFLVARA TSRHLNNSKD 240
  241 SAVGAWISQK LCSF

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.89
Non-Cytoplasmic	55	89	0.92
Transmembrane Helix	90	111	0.93
Cytoplasmic	112	144	0.97
Transmembrane Helix	145	167	0.92
Non-Cytoplasmic	168	203	0.96
Transmembrane Helix	204	227	0.91
Cytoplasmic	228	254	0.97