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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|217496577, gi...
Protein type: Transmembrane
Type Confidence: 0.42
Topology Confidence: 0.38
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTRKTDQV VESKAPALGL NRRQFLKSAG LATGGIAAAS MLGTGMMRKA QAQEDIGHNV  60
   61 PTEVKRTICS HCAVGCGVYA EVQNGVWTGQ EPAFDHPFNQ GGHCAKGAAL REHGHGEKRL 120
  121 KYPMKLEGGK WKKISWDQAI NEVGDKMAAI RQESGPDSVY FMGSAKFSNE QAYLYRKLAA 180
  181 LWGTNNVDHS ARICHSTTVA GVANTWGYGA QTNSINDIRH TKCIMFVGSN PSEAHPVAMQ 240
  241 HILVAKERGA KVIVVDPRFT RTAAKSDEYV HIRPGTDIPF IYGLLWHIFE NGWEDKEFIK 300
  301 QRVYGIERIR EEAKKYTPEE VELVAGVPKA QMYRVAKMLA ETKPGTIVWC MGGTQHHVGN 360
  361 ANTRSYCILQ LALGNMGVSG GGTNIFRGHD NVQGATDFGL LFDNLPGYYG LTTGAWAHWS 420
  421 NVWDLDPKWI ASRFDQGEYL GQTPQTSAGI PCSRWHDGVL EDKTKIAQKD NIRLAFFWGQ 480
  481 SVNTETRGRE VREALNKMDT VVVVDPFPTM AGVMHQRKDG VYLLPAATQF ETYGSVSASN 540
  541 RSLQWRTKVI EPLFESLPDH IIMYKFAKKW GVEKEFCKHI QVNGEEPLIE DVTREFNTGM 600
  601 WTVGYTGQSP ERLKMHQENW GTFDVNNLTA PGGPAKGEVY GLPWPCWGTP EMKHPGTQIL 660
  661 YDQSKHVKDG GGNFRARYGV EHDGVNILAE GSFSKGSEIQ DGYPEFSADM LKQLGWWDEL 720
  721 TDAEKKRAEG KNWKTDISGG IQRVAIKHGC IPYGNAKARC IVWTFPDDIP KHREPLYTPR 780
  781 RDLVAKYPTY EDRMVARLPT LYKSIQDKDF TQGFPLTLTS GRLVEYEGGG EESRSNPWLA 840
  841 ELQQEMFIEM NPADAADRGV RDGDNVFVHG PEGAKITVKA MVTPRVIAGE CFMPYHFAGV 900
  901 FEGESLAKNY PEGTVPYVIG ESANTILTYG YDVVTQMQET KSSLCQISKA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle