YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68543210, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.81
Transmembrane Helix	20	38	0.85
Non-Cytoplasmic	39	41	0.65
Transmembrane Helix	42	63	0.75
Cytoplasmic	64	68	0.62
Transmembrane Helix	69	88	0.79
Non-Cytoplasmic	89	95	0.70
Transmembrane Helix	96	115	0.92
Cytoplasmic	116	128	0.66
Transmembrane Helix	129	146	0.80
Non-Cytoplasmic	147	147	0.48
Transmembrane Helix	148	167	0.80
Cytoplasmic	168	208	0.62
Transmembrane Helix	209	228	0.84
Non-Cytoplasmic	229	244	0.58
Transmembrane Helix	245	267	0.74
Cytoplasmic	268	306	0.74
Transmembrane Helix	307	339	0.76
Non-Cytoplasmic	340	356	0.72
Transmembrane Helix	357	380	0.86
Cytoplasmic	381	395	0.66
Transmembrane Helix	396	415	0.77
Non-Cytoplasmic	416	457	0.80
Transmembrane Helix	458	476	0.86
Cytoplasmic	477	483	0.72
Transmembrane Helix	484	505	0.89
Non-Cytoplasmic	506	533	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATMSQAFI GNFLGNSPKW YKTAILSFLI INPLLFFYVD PFVAGWVLVL EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSASQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFGFTK 120
  121 IITKVRSKVL VSLMFCLASA FLSAFLDALT VIAVIIAVAV GFYSIYHKVA SGKDFGADHD 180
  181 HTSEGKNAAG EDQLNEEELG AFRGFLRNLL MHAGVGTALG GVCTMVGEPQ NLIIAAQANW 240
  241 QFGEFAVRMS PVTVPVLISG ILTCYLVEKF GIFGYGAKLP TAVHRILCEY AAHEDARRTN 300
  301 KDNMKLIVQA LVGVWLIAGL ALHLASVGLI GLSVIILTTA FNGVTDEHAL GKAFEEALPF 360
  361 TALLAVFFAV VGVIIDQHLF APVIQWALGY ERHTQLVIFY IANGLLSMVS DNVFVGTVYI 420
  421 NEVKAALING QITRDQFDLL AVAINTGTNL PSVATPNGQA AFLFLLTSAL APLIRLSYGR 480
  481 MVWMALPYTI VLSIVGVMAI QTGFLEQATQ YFYDSHTIIH HSAKEVLGTV SGH