YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126176110, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATTTRKS RTKKTEQKSQ PKIYTFEWKG LNRDGKKTAG ELRGATAAEI RSQLKSQGVN  60
   61 PKSVRKQSSA LFKLGDPKIT PMDIAVITRQ IATMLAAGVP LVTTIELLGR GHEKAKVREL 120
  121 LGNILSEIQS GIPLSDAMRP HRRYFDELYV DLVAAGEHSG SLDLVFDRVA TYREKSEALK 180
  181 SKIKKAMFYP AAVVIVAILV TSLLLLFVVP QFEEIFKGFG AELPAFTQLV LHISRGLQSS 240
  241 WYIFLAAIIG GVFLFVRAHR NSQIVRDRVD EAVLKIPAIG SILHKGAMAR FARTLATTFA 300
  301 AGVPLIDGLE SAAGASGNAV YRKAILKIRQ EVMAGMQMNV AMQTTGLFPD MLVQMVMIGE 360
  361 ESGSLDNMLN KVSTIYEMQV DDAVDGLSSL IEPIMMVVIG TVVGGLIVAM YLPIFQMGKI 420
  421 VS

Type	Start	End	Confidence
Cytoplasmic	1	186	0.92
Transmembrane Helix	187	209	0.94
Non-Cytoplasmic	210	238	0.93
Transmembrane Helix	239	258	0.93
Cytoplasmic	259	338	0.74
Transmembrane Helix	339	353	0.44
Non-Cytoplasmic	354	393	0.69
Transmembrane Helix	394	415	0.93
Cytoplasmic	416	422	0.70