YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126175282, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	38	0.98
Non-Cytoplasmic	39	53	0.79
Transmembrane Helix	54	75	0.92
Cytoplasmic	76	82	0.79
Transmembrane Helix	83	104	0.75
Non-Cytoplasmic	105	109	0.50
Transmembrane Helix	110	128	0.84
Cytoplasmic	129	141	0.70
Transmembrane Helix	142	164	0.82
Non-Cytoplasmic	165	179	0.71
Transmembrane Helix	180	200	0.89
Cytoplasmic	201	255	0.88
Transmembrane Helix	256	275	0.90
Non-Cytoplasmic	276	281	0.70
Transmembrane Helix	282	300	0.85
Cytoplasmic	301	313	0.71
Transmembrane Helix	314	337	0.81
Non-Cytoplasmic	338	352	0.65
Transmembrane Helix	353	377	0.76
Cytoplasmic	378	428	0.42
Transmembrane Helix	429	450	0.90
Non-Cytoplasmic	451	451	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKAAKPLV KLVDRYLPDP YIFVLLLTLV VLIAAVVAEH KTPLEVINYW GDGFWTLLSF  60
   61 SMQMLLVLVA GFMLASSPPI KKLLDAIAGC AKSAPQAIIL VTLVSLAASW VNWGFGLVVG 120
  121 ALFAKALARK VKVDYRLLVA SAYSGFVVWH GGLAGSIPLT IATAGHFSEA QIGIIPTSET 180
  181 IFASFNLLLV AILFVVMPLV NRFMLPEDKD CIYVDPSALD DKGSEPAASA LEFTPANVSE 240
  241 RQLENRPADK LENSRLLGWS VGGAGLVYLG YYFWVQGGSL NLNLVNFLFL FLAILLHQTP 300
  301 RSLLTSLNEA IKGGAGIVIQ FPFYAGIMAV MVQSGLAQSI SEGFVAIASA ESLPFWSFIS 360
  361 AGIVNIFVPS GGGQWAVQAP IMLPAAEALG ADVARVAMAV AWGDAWTNLI QPFWALPVLA 420
  421 IAGLKARDIM GFCLMQLMIT GVIISIALSW F