YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68542000, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	186	0.99
Transmembrane Helix	187	206	0.93
Cytoplasmic	207	214	0.68
Transmembrane Helix	215	237	0.88
Non-Cytoplasmic	238	242	0.85
Transmembrane Helix	243	264	0.88
Cytoplasmic	265	278	0.85
Transmembrane Helix	279	298	0.93
Non-Cytoplasmic	299	304	0.69
Transmembrane Helix	305	327	0.89
Cytoplasmic	328	335	0.88
Transmembrane Helix	336	358	0.92
Non-Cytoplasmic	359	365	0.91
Transmembrane Helix	366	387	0.90
Cytoplasmic	388	628	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRNSSLIL LLWLWMCSTP SFATLLSIDE STTTPLNLTP WLMVSHPTSA KEFTEIQALP  60
   61 KTDWHNFTNK DIQKLSGHDF WLSFSLTSPD ETLSRILALD NPLLDKVTIY HLVNNKLANT 120
  121 VLMGDTFPYN ERPFLSNIFL YPFKLNMDDT HTFYLHIQTE GSAAIPLNLW SSNDLAQIAE 180
  181 STAVEHGFQL GVLAAIGIFS LFIAIASGSF SYSYYSGYVL SMTLLVATIN GFAFRFLWPN 240
  241 WPILQQVMVP FLLPIVMAFA LMFTEKILQL KYLNRRMLLT CRYSAVYILC IGLATPFIQY 300
  301 GTALYIEIIS VAVLSLVLMV FAITQAINGH KLARMYTIGW VSMLTGACIS SLLYLSVIDL 360
  361 NLKPQTPVML GLTFEIIFMS LVLAIRYNDE RKAKLRIQQE ALRQAQKIRS AREEALKAEA 420
  421 ESNEKLEQMV QERTLELEIT LRELHEVNQK LTEQSTIDSL TGVKNRSAFD KRLIAESRIS 480
  481 RRQETPIALL MLDIDRFKLI NDRFGHLAGD EALRTIAQTL QQHLKRPTDL VSRYGGEEFA 540
  541 IILPNTAEDG ALQVAETIRD AVASLHFEWE GVAIPLTISI GVSADIVTND QHSTKLLEQA 600
  601 DKALYQAKNG GRNQVSLFSS VQARPVPN