YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160876663, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQTLKINTS ALKHSFNWLV LVGLAFFVSA CSKQNEVISL AGSTMGTTYH IKVVPNEQMP  60
   61 TAQLLQAEID LALELVNDQM STYRPDSELS RFNQLPLEQS VEVSPDTIKV VQEGVRLYQV 120
  121 TDKALDITLG PLVNLWGFGP DKRPTKVPSQ ADIDAAKAKT GISELSIEGN RLTKHNAHLY 180
  181 VDLSSIAKGF GVDKVASILD KYHATGYLVE IGGELSIKGA KGDGSSWRVA IEQPTDDGSE 240
  241 AVQQVISPGT MAMATSGDYR NYYEEDGQRF THIIDPRTGL PINHKLASVT VLHQNCMTAD 300
  301 GFATAMMVLG TEASLELAKK EHLAIMLIEK QGDGFKVYYS DAFKPFLI

Type	Start	End	Confidence
Signal Peptide	1	32	0.97
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	348	0.99