YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_SHEB5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERESWHKE IDLFLVAMGY FTRIPMPKWV EADSDKLNKA SRYFGLVGLL VGLLSAIVFW  60
   61 LTQNWLPAGV SVLLAMLVGV LLTGGFHEDG LADTFDGFGG GWTAEDKLRI MKDSRLGSYG 120
  121 ALALMLALLL KWQLLVELAL YDPVVAGSAL IVAHTVSRMV SASIIFSEKY VRDDETSKSK 180
  181 PLSQHQGINE LLILIASGVL VLLFLKGLAA LSLLLVMIGL RRLIIVIFRR QIGGYTGDTL 240
  241 GAAQQIAEIV CYFVLLVVGN IL

Type	Start	End	Confidence
Cytoplasmic	1	42	0.88
Transmembrane Helix	43	61	0.95
Non-Cytoplasmic	62	67	0.69
Transmembrane Helix	68	86	0.93
Cytoplasmic	87	115	0.90
Transmembrane Helix	116	135	0.89
Non-Cytoplasmic	136	190	0.59
Transmembrane Helix	191	220	0.80
Cytoplasmic	221	262	0.48