YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68520587, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKQLALAVT LAIAPLSTFA ANFVEGTHYT QISAKTPSSE PKLTEFYSFY CHNCFNMETN  60
   61 YLPDIKANLN KQISFDNKHV DFMNSDIGTE VMRSLAVIQS LDNKDALTHA MFTAIQGTEG 120
  121 ANGHDHSAPG HQHEPQINSR DDIKKVFAQF GVDAAKYDEL ADSKSTDEKL ALWRTQQNEF 180
  181 KIDSVPAFIV NDKYAVNLNS IKTLDELIGL INYLAVEKDA AAAKTSSGGS LGWLFLVFAA 240
  241 AIGVTRLQRL S

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	230	0.99
Transmembrane Helix	231	247	0.56
Cytoplasmic	248	251	0.42