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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68541595, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSEPDLQL KSPIQKNYNR AVFYTYIGVI VMSLLTAWMF FDRQKAQQME QREEQVQRHV  60
   61 LQIDLLLESS IRAVKSLRNV AVDHLRLGEL VRKERLPQYG KFNESGQYFT LEPSYAQSGE 120
  121 PFTNMGRITG AGSLDGRSDK FYQELEMLFE LSLSFPVAKE AAPKASAIYY LSKRRIMSYF 180
  181 PWSNDDQRFR DELLNKKQFQ YATPAMNPQR SVFWSEAYVD STGKGLLTTL GVPVYLDDEF 240
  241 IGSINLDMTL ASLARQIRVY FKMPGTVILL DQQNNILSHS DFDSSDINRV YHISQRIPSE 300
  301 LHSLPESELF DAHDGIIRNG YYIHSVALHN APWRLLYLQD EDDLFQDSWE KLQLTFILVV 360
  361 IALSVLVTIV HWQTRRSFVS PASRLLSHLE GCSQEPRKPP EKITRGWEPW FLLVSRIFEE 420
  421 NKQYTHHLAE QNKRLDKLVA RRTERLKDTT ERREREYALL RSLLDSIPEA IVFKDKEGNY 480
  481 LGCNKAAERM LGYTESEMIG LSSEDLTSPE MGIRIRAEDE QVLKDRTPLR YQEKVELAGK 540
  541 PVLLDTLKLP FYNRRGELQG LIAVWRDVTR EYESAEQLRL SEERYHLAMD AVEDGLWDWY 600
  601 LDSEQIICNP AYYSMLGYKT NEFPALVSTI DELSHPDDRI RVEGYRAQYL ADPVGAYEIE 660
  661 FRMLGKNGGY HWVLSRGRVV EFTAEGQPKR MLGTHKDITR HKSNEVALLE AKQDAELANL 720
  721 YKSEFLANMS HEIRTPMNAI IGMLQLAQRT SLTAQQKDYL EKAGFSAQSL LRIINDILDF 780
  781 SKIEAGKLEL ERVPFPLDKV LDHALDLNAL KAQEQGVELL LYAPVTAGLI LKGDPLRLGQ 840
  841 VLINLLSNAV KFTQSGEIEL GCEDVGERDH RITLKFWVRD TGIGIGKDQQ DKLFDAFAQA 900
  901 DGSTTRKYGG TGLGLSISKH LVSMMGGKMQ VQSELGVGST FSFTISFEIA EAAKIEPLVV 960
  961 PEKLNSLRTL VVDDNPTALQ IYSTLMRDFH FEVDTAASGA EALYKLSRAP IDLLLLDWMI1020
 1021 PEMDGSDVVS AIDTMVAEGR LAKRPVIIMM TAYAAEPLQH EVDSANVFAV LQKPFKASSL1080
 1081 FDEIIAAFAD EPRLNVVQPM VEVQVEDGEH TGLVLLVEDN FINQQVATEL LKSAGYEVVL1140
 1141 AGNGQVALDT IDSRPFDAVL MDIQMPVMDG LTAARALRER FSADDLPIIA MTAHAMSGDR1200
 1201 EKSLAAGMNA HITKPIVLNE LFETLNHWIK HKNQHQNR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle