YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126175920, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	205	0.99
Transmembrane Helix	206	230	0.91
Cytoplasmic	231	251	0.80
Transmembrane Helix	252	274	0.87
Non-Cytoplasmic	275	285	0.74
Transmembrane Helix	286	306	0.96
Cytoplasmic	307	326	0.93
Transmembrane Helix	327	350	0.89
Non-Cytoplasmic	351	368	0.80
Transmembrane Helix	369	390	0.90
Cytoplasmic	391	402	0.83
Transmembrane Helix	403	424	0.88
Non-Cytoplasmic	425	431	0.62
Transmembrane Helix	432	447	0.78
Cytoplasmic	448	460	0.66
Transmembrane Helix	461	481	0.87
Non-Cytoplasmic	482	619	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLSLIFT SLLLLTPLAH SEGVFGNKFD FMKSEPELMP VDQAFAFDFK QEGNQVKLNW  60
   61 VIADGYYMYR DKLKFTVNGA ELGTVALPKG KPHEDEYFGE QEVYYTYVDI PVALKQADEN 120
  121 ATLTVTFMGC AEGKLCYPPT KRDVVLKAIA ANDGLIAGAE ASESTAAAKP ASTESASIEP 180
  181 STADKANTQP ITQQDTLSQM LSNDSLIWTL LIFFGLGVGL ALTPCVFPMY PILSGIIVGQ 240
  241 GQKLSTAKAF TLSMAYVQGM AITYSILGLV VASAGLKYQA ALQHPAVLVV LAILFFVLSL 300
  301 SMFGLYDLKL PSSWQEKMNS VSNNQKGGNL VGVFLMGVIS GLVASPCTTA PLSGALVYVA 360
  361 QTGDLLQGFL ALYVLSMGMG LPLLIIGTSG GKLLPRAGAW MDIIKTVFGF LLIAVSIVML 420
  421 GRIWTGVVSD VLWSLWGVSF TGYLMHQNKL SPFNWKQTVR SVLLTLTLLA SFSYGFQAVM 480
  481 GHFGFNHNPV GTAATTEEAH GFKRIKSIKD LDQEIAAAAA QGKPVMLDLY ADWCVACKEF 540
  541 EAITFKDADV LARMNKIVLL QADVTKSDKV DVALLEKYNV LGLPTLLMFN EQGEQREDLR 600
  601 VTGFMGPKDF AAHLDHLVK