YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91791497, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSKQRGVA LITVILIVAM VVIIATNISA RNQLSMRRTM NLTQYDQAYW YALSAEELTK  60
   61 KVLKQDLDDS KGIVHRQQFW ALADVVFPAE YGEIVGQVSD MRACFNLNAL AAVSKSNDNG 120
  121 QPKLPLAAKQ FKALLVGLGM DDFAAERLTH TLKDYVDADS INSPYGAEDA EYESRNVPYR 180
  181 AANTLMNHKS ELRAVLGFTK EVYRHLGPLV CAIPGNDRQL LNVNTLEIEQ APLLMAMFDN 240
  241 QISLGEAENI IGQVPASGYE KIDEFWQNSS IVGLKVDADA KSSFVIDSDY FLLKAGAKVN 300
  301 EAIFRMESVL KKGSGNSMDV LTRQYGNQDF YASPNASSST NSSSERSTNN NSNNTNENNN 360
  361 KR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.78
Transmembrane Helix	8	30	0.80
Non-Cytoplasmic	31	362	0.92