YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91791498, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLFIRLG SHQEQACSWL VWSEQEQEII ASGELSDAAS LASLKDRVGN RPVDILVPTS  60
   61 SMMLTDINLP EKGQRQALRA LPFLMEESLA TSIEDMHFVV GPRTGEKLSV IAVAHQQMQD 120
  121 WLTWLSDAGL KAKRLVPDCL ALPLDECQWA AIRCGDELVI RTGQGTGVSL PEAWQSFALP 180
  181 KLMASTPTGD ESINVASYSQ ELAFASANIE HKPLELPMLV FAKGILNAPV NLLSGVYKPK 240
  241 REYSKQLLLW KNSAIICVLA IVLALVNKGL DIRQLNQATM ELNQQSESIF KSVSPSTQRV 300
  301 VNIHSQMGAM LKSMQGQGGG VAFFEMLSGL QTAFKQIPDL KPNSLRFDAN RNEIRMQITA 360
  361 NSYGQIEQFK DLVSKDFEID TGAMNSNEDK VTSTVTVRSK

Type	Start	End	Confidence
Cytoplasmic	1	247	0.57
Transmembrane Helix	248	266	0.71
Non-Cytoplasmic	267	400	0.84