YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_SHEDO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATGDALTP QGYIQHHLTN LSVGEGFWTW HIDSLLFSVG LGVLFLWIFR SVGKKATTGV  60
   61 PGKLQCLIEM IVEFVDASVK ETFHGRNPVI APLALTIFVW VFMMNFMDMI PVDWLPSLAL 120
  121 LAGVEYLKVV PTTDVNITFS LAIGVFVLII YYSIKVKGVS GFVKELTLQP FNHWAMIPVN 180
  181 LLLESVTLIA KPISLALRLF GNLYAGELIF ILIALMYSAN WAMATLGVGL QLGWLIFHIL 240
  241 VITLQAFIFM MLTIVYLSMA HEDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.96
Transmembrane Helix	27	49	0.89
Cytoplasmic	50	88	0.90
Transmembrane Helix	89	110	0.84
Non-Cytoplasmic	111	134	0.71
Transmembrane Helix	135	154	0.91
Cytoplasmic	155	199	0.62
Transmembrane Helix	200	224	0.79
Non-Cytoplasmic	225	233	0.62
Transmembrane Helix	234	257	0.91
Cytoplasmic	258	264	0.64