YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91794886, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRKWWRRFL PHSAFSQTVV LIGSLLLINQ LVSYLSVTVY FIKPSYEQIN QLIARQINLL  60
   61 FVDGVEVGRE HLTIVDALNA KVRDDGMRFY SQRQAERAGV EQATYYGFLS DQMSIYLGGK 120
  121 ADVRLSQGSE MQVWIRPPQA PSLWIKVPLA GFNESDLSPL TLYLIVIGAL SVAGGWWFAR 180
  181 QQNRPLKRLQ KAALTVSKGD FPDPLPLKGS TEIVEVTHAF NHMAQSMKQL EQDRALLMAG 240
  241 ISHDLRTPLT RIRLASEMMV EEDQYLKEGI VTDIEDMDAI INQFIAYIRH DRETPREPDQ 300
  301 IHRLIQEIAQ QEMHREGEIE LDLQDCPEIP MQSVAIKRVL SNLVENAFRY GNGWIKISAY 360
  361 SERNYVCFSV EDNGTGIAAD KIDELFQPFT QGDSARGSMG SGLGLAIIKR IVDRHHGKVK 420
  421 LSNRAQGGLC AKVWLPLV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.75
Transmembrane Helix	14	34	0.75
Non-Cytoplasmic	35	159	0.93
Transmembrane Helix	160	179	0.92
Cytoplasmic	180	438	0.90