YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|98976680, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMALFARTPR APLEYSRTLW MRLWVGAVMV FLYAPLVVLM IFSFNDSKRN VVWRGFTTKY  60
   61 YEKALGNDQL VEALVNSLTI AALATLASLV LGTLAAVMLW RFRFPWKGAI DGTISLPIIV 120
  121 PEICLGVAFL MFFAAIGWPN DLVWPFNLGA ITIAHITFCF PFVTMVVRSR LASFNREQEE 180
  181 AAKDLGASEW QVFRDVLIPH MKPALVAGAL LSFTLSLDDF VITYFTSGPD TITFPVKVYS 240
  241 MVRFSVTPEV NAASTLLIIL TVVLTFVALK AQGVKAIAET H

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	43	0.93
Non-Cytoplasmic	44	78	0.96
Transmembrane Helix	79	100	0.93
Cytoplasmic	101	113	0.84
Transmembrane Helix	114	136	0.91
Non-Cytoplasmic	137	145	0.77
Transmembrane Helix	146	167	0.90
Cytoplasmic	168	203	0.92
Transmembrane Helix	204	225	0.80
Non-Cytoplasmic	226	249	0.87
Transmembrane Helix	250	269	0.91
Cytoplasmic	270	281	0.80