YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115516897, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVSTRRMA KHTLSLPNIL TYTRIAAVPV VVGCIYAQSI MDGPLWLRWM ALAVFVVAAV  60
   61 TDFFDGYLAR AWDQHSAFGR MLDPIADKLL VASCLLMLAA DGIIHGWTLW AAIVILCREI 120
  121 LVSGLREYLA ALRVSVPVTR LAKWKTTAQL VAIGFLLAGE AGDQVLPFNT QIGLALLWIS 180
  181 ALVTIYTGYD YFRAGIHHLI EEDAE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	46	0.82
Transmembrane Helix	47	68	0.90
Cytoplasmic	69	84	0.87
Transmembrane Helix	85	104	0.84
Non-Cytoplasmic	105	108	0.52
Transmembrane Helix	109	130	0.61
Cytoplasmic	131	140	0.65
Transmembrane Helix	141	161	0.60
Non-Cytoplasmic	162	169	0.71
Transmembrane Helix	170	189	0.88
Cytoplasmic	190	205	0.84