YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77698482, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPVHRETHL IERIGWLRAA VLGANNGIIS TASLVVGVAA AATSSKEVLI AGIAGLVAGA  60
   61 MSMAAGEYVS VSSQADTEQA DLARERKELA EAPEFELDEL TKIYVDRGID PTLARQVAEQ 120
  121 LTAKDAFAAH ARDELGLSAH VIARPVQAAL TSALTFSVGA ALPIGIVLLS PPGSTSVVVS 180
  181 GGSLVCLAIL GAVSARIGGA GIVKPTLRVT FWGTLAMTAS AAIGALVGHA V

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	42	0.93
Non-Cytoplasmic	43	47	0.88
Transmembrane Helix	48	69	0.90
Cytoplasmic	70	147	0.97
Transmembrane Helix	148	169	0.91
Non-Cytoplasmic	170	176	0.78
Transmembrane Helix	177	199	0.90
Cytoplasmic	200	208	0.86
Transmembrane Helix	209	229	0.94
Non-Cytoplasmic	230	231	0.81