YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68537637, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDELDKPGT EKPNIAAPPA HDHGKNANSR RLLLALILTG TFLVAEVVGS FVFNSLALLS  60
   61 DAGHMLTDVA ALIIALMAIR IGARPADDQR TFGYRRFEIL AAAFNALMLF AVAIYVLVEA 120
  121 LNRFRDPEPV QSTGMLVVAV AGLAINLISM RLLSSGKEQS LNLKGAYLEV WADMLGSIGV 180
  181 IAGAIAIRFT GATWIDPVVA VGIGLWVLPR TWILLRDTAN VLLEGVPRGM SLDEVRRAIS 240
  241 EVSGVQSAHD LHVWSITTGN VSCSVHIVVE DIAQAEPTRT RVAQMLAQAF QIGHATIQTE 300
  301 SKQCAEARST HS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	53	0.92
Non-Cytoplasmic	54	63	0.70
Transmembrane Helix	64	83	0.93
Cytoplasmic	84	98	0.87
Transmembrane Helix	99	118	0.94
Non-Cytoplasmic	119	131	0.83
Transmembrane Helix	132	153	0.89
Cytoplasmic	154	166	0.89
Transmembrane Helix	167	187	0.90
Non-Cytoplasmic	188	193	0.69
Transmembrane Helix	194	214	0.86
Cytoplasmic	215	312	0.95