YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115524892, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGAGARAML SLEFAIVIVL IVVNGLLAMS ELAIVSSRPG RLAVLVQRNV RGASQALALA  60
   61 SDPGKFLSTV QIGITLVGVL SGAFSGATLG LRLTAWLGEQ GVPNAAADIL GFGLVVTMIT 120
  121 YATLIVGELV PKQVALRDPE AVAVRVAPAM VLLAKVSLPL VYVLDFSGRA ILKALGQGGA 180
  181 AEDKVSEDEI HSLVREAETA GVLEPGEKEM IAGVMRLGDR PVGAVMTPRP DVDLIDLNDS 240
  241 WEDVCEIIRD SPHSRLPVTD GNRDDPIGII QAKDVLGAYL RGEKPDLRAL VRDAPVIPSS 300
  301 ADARDVLATL RKATVHMGLV YDEYGVFEGV VTTADILESI VGAFSSEQGP AEPAFVRRDD 360
  361 GSYLISGWMP VDEFGDLLPV PVPEHRDYHT VAGLVLQHFG ALPAVGDRFD YQGWRFEIVD 420
  421 LDGRRIDKIL ATKLDDPEAA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	35	0.81
Non-Cytoplasmic	36	69	0.68
Transmembrane Helix	70	93	0.86
Cytoplasmic	94	104	0.58
Transmembrane Helix	105	127	0.87
Non-Cytoplasmic	128	440	0.66