YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77701269, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAATETFYE VIRRQGITRR SFIKFCSLTA TSLGLGPIGA AEIAQALETK PRVPVIWMHG  60
   61 LECTCCSESF IRSAHPLVKD AVLSMISLDY DDTIMAAAGH QAEAILEETR KKYKGQYILA 120
  121 VEGNPPLNED GMYCIDGGRP FVEKLKEMAD DSMAVIAWGA CASWGCVQAA KPNPTQAVPI 180
  181 DKVIKNKPII KVPGCPPIAE VMTGVVTYIT TFGKLPDLDR QGRPKMFYSQ RIHDKCYRRP 240
  241 HFDAGQFVEE WDDDAARKGF CLYKMGCKGP TTYNACSTVR WNGGVSFPIQ SGHGCIGCSE 300
  301 DGFWDKGGFY DRLTTIQQFG IEANADKIGA TVAGTVGVAI AAHAAVTTVR NLTRKKEVPS 360
  361 DNNGASNGKS A

Type	Start	End	Confidence
Cytoplasmic	1	20	0.67
Transmembrane Helix	21	41	0.64
Non-Cytoplasmic	42	371	0.96