YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77655009, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDLPARAV LVSSMNDVST RAPARGTKSL TLPNILTYAR IAAIPVVVGC IFAQSILGGP  60
   61 LSLRWVALAV FIAAAITDFL DGYYARIWDQ HSAFGRMLDP IADKLLVASC LLMLAADGII 120
  121 HGWTLWAAIV ILCREILVSG LREYLAALRV SLPVTKLAKW KTTVQLVAIG FLLAGDAGDE 180
  181 VLPYTTQIGL ILLWISALVT MYTGYDYFRA GIHHLIEEDS R

Type	Start	End	Confidence
Cytoplasmic	1	35	0.89
Transmembrane Helix	36	57	0.90
Non-Cytoplasmic	58	64	0.68
Transmembrane Helix	65	85	0.90
Cytoplasmic	86	100	0.79
Transmembrane Helix	101	120	0.79
Non-Cytoplasmic	121	124	0.46
Transmembrane Helix	125	145	0.61
Cytoplasmic	146	156	0.65
Transmembrane Helix	157	175	0.64
Non-Cytoplasmic	176	184	0.71
Transmembrane Helix	185	205	0.89
Cytoplasmic	206	221	0.88