YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77688002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADLLRLSL FPALMAFAAA SDLFTMTISN RVSLLLVAGF IVLAPLTGMG LYEIASHFGA  60
   61 GLAVLAVAFG CFAMGWVGGG DAKVAAAAAL WFGFGHLLDY LVYASLFGGA LTLLLLSFRQ 120
  121 WPLPYQLAGQ GWLMRLHAKE TGIPYGIALA MGALAVYPQT EWIQAVDLAR FAAH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.67
Transmembrane Helix	8	26	0.83
Non-Cytoplasmic	27	31	0.60
Transmembrane Helix	32	52	0.88
Cytoplasmic	53	57	0.62
Transmembrane Helix	58	80	0.88
Non-Cytoplasmic	81	99	0.66
Transmembrane Helix	100	121	0.88
Cytoplasmic	122	140	0.72
Transmembrane Helix	141	160	0.83
Non-Cytoplasmic	161	174	0.71