YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77687363, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMRKLLESF NYAFEGIIYA LKTQRNMKIH FVVSIVILIM SLFFELTRIE ILILLMTISL  60
   61 VIIAEMINTS IESTIDLITD QYHIFAKIAK NVAAGAVLIA AINSIIVAYL LFFHRLNPYT 120
  121 SIVLEQVRQS PLHVTFITLI IVIFVTIALK AYFGRGTPLQ GGMPSGHGAI SFALATSITF 180
  181 ISENMFIGTL SILMALLVCQ SRIEGKIHTF FEVIMGAILG ILITVIIFQV FG

Type	Start	End	Confidence
Cytoplasmic	1	28	0.72
Transmembrane Helix	29	63	0.70
Non-Cytoplasmic	64	91	0.73
Transmembrane Helix	92	113	0.95
Cytoplasmic	114	131	0.81
Transmembrane Helix	132	153	0.93
Non-Cytoplasmic	154	171	0.74
Transmembrane Helix	172	198	0.83
Cytoplasmic	199	208	0.77
Transmembrane Helix	209	230	0.93
Non-Cytoplasmic	231	232	0.77