YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77687043, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVRKAVIPA AGLGTRFLPA TKALPKEMLP IVDKPTLQYI IEEAVDSGIE EILIITGRNK  60
   61 SSIENHFDKS IELELELEKK GKDELLKQVR AISDMVNIHY IRQKEPKGLG HAIHCAKSFI 120
  121 GNEPFAVMLG DDIVENDKPC LEQMMEMYDE YKTTILGVQE VPKESVNKYG IVDGMHIEGG 180
  181 IYKVKDLVEK PSPQEAPSNI AILGRYIINP EIFDILENTK PGKGGEIQLT DALKELAHRE 240
  241 AMYAYVFEGR RHDVGDKQGF LEATVEFALK REDLREGFLN YLEDVVKKER ESKALEEVAV 300
  301 TTEQKSS

Type	Start	End	Confidence
Signal Peptide	1	23	0.82
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	307	0.99