YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77638827, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNICFTTQ ESWELGNPKH RKEYIQKNIG GLKMLGTIYN VIAIIVGALL GVILRKGIPE  60
   61 GHKKTIMQGI GLSVMVIGLS GALKTENILL MVFSIVIGGV IGEALCIEKR LDGVGDWLES 120
  121 KVGQRGGSVA KAFVTTSLIY CVGAMAIVGA LESGLTGNHQ TLYAKSLIDG VSSIIFASTL 180
  181 GIGVIFSAVP VFLYQGFIAT TAGLIEPLLT NAVINEMSAI GGLLIVGIAF NILEIKKIHV 240
  241 GNLLPAIFIP IFYAILQPYM VQISSVVQNL F

Type	Start	End	Confidence
Cytoplasmic	1	34	0.53
Transmembrane Helix	35	54	0.93
Non-Cytoplasmic	55	64	0.45
Transmembrane Helix	65	83	0.85
Cytoplasmic	84	87	0.52
Transmembrane Helix	88	107	0.78
Non-Cytoplasmic	108	131	0.68
Transmembrane Helix	132	155	0.80
Cytoplasmic	156	170	0.66
Transmembrane Helix	171	194	0.86
Non-Cytoplasmic	195	211	0.67
Transmembrane Helix	212	233	0.88
Cytoplasmic	234	239	0.72
Transmembrane Helix	240	261	0.87
Non-Cytoplasmic	262	271	0.78