YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77685220, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIATIIGII VGLGFVVMGI TADGDIAGFL QLSSMLIVFG GTFSATLVAY PLQQVLDTIK  60
   61 IVSKAFSNNK VDPGSIIKSI IELANVARKE GLLALEEAAE GINEDFLQKG VMLIVDGTDP 120
  121 ELVRNLLETE LAFIEERHQG GQGLLEMMGA LAPAFGMVGT LIGLINLLRD LDDPASIGPN 180
  181 MSVALLTTFY GALMANLIFI PLANKLKLRS REEILRKEIM VEGLLSIQAG ENPRIIEEKL 240
  241 KAFLPPKLRQ SEEEESRESE EA

Type	Start	End	Confidence
Cytoplasmic	1	4	0.83
Transmembrane Helix	5	22	0.92
Non-Cytoplasmic	23	31	0.57
Transmembrane Helix	32	52	0.88
Cytoplasmic	53	146	0.95
Transmembrane Helix	147	168	0.90
Non-Cytoplasmic	169	182	0.85
Transmembrane Helix	183	203	0.91
Cytoplasmic	204	262	0.97