YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77684725, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKECIAMIL AGGQGTRLGM LTKNIAKPAL PFGGKYRIID FTLSNCSNSG IDTVGVLTQY  60
   61 EPLVLNSYIG IGSHWDLDKK SGGVMVLPPY VKENGGNWYR GTADAVYQNL DFVEHYEPEY 120
  121 LLVLSGDHIY KMDYSAMLKH HKEKQADATI AVIRVPSEET YRFGIMNTDE EERIIEFQEK 180
  181 PENAKSDLAS MGVYIFNWKK LKKHLIEEDQ NPDSSLDFGK NIIPKMLNEG EKLFAYGFQG 240
  241 YWKDVGTVES YWEANMDLIE DDASLDLHER NWIIYSVNPS QPPQYIGPSA KVTESLLNEG 300
  301 CQIFGEVSHS VIFPGVYIGK GAVVKDSVIM ANAIIGDHAK IEKSIIAEKA IIQKKEIIGD 360
  361 NKKNDITVVA T

Type	Start	End	Confidence
Signal Peptide	1	15	0.54
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	371	0.99