YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150390667, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNSAVKD SQAQGSQQTA PKKKKRSQWV AVWGRLRKNK AAMVGLTILT ILILTALFAD  60
   61 VIAPDGYDSQ NLTNRFQSPS REHLFGTDNF GRDIFDRIVH GSRISLQVGF VAVGIAAIVG 120
  121 GSLGAIAGYY GGKLDNVVMR LMDVLLAIPG ILLAISIVAS LGPGLTNVMI AVGIGSIPGY 180
  181 ARIVRASVLT IRDQEFVEAA RAIGANDFRI IMKHILPNSM APIIVQATLG VAGAILSAAG 240
  241 LSFIGLGIQL PTPEWGAMLS SGRQYMRDYW HIATFPGLAI MFTIFGLNLL GDGLRDALDP 300
  301 RLKN

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	63	0.92
Non-Cytoplasmic	64	107	0.97
Transmembrane Helix	108	130	0.92
Cytoplasmic	131	140	0.77
Transmembrane Helix	141	159	0.92
Non-Cytoplasmic	160	164	0.59
Transmembrane Helix	165	184	0.77
Cytoplasmic	185	222	0.77
Transmembrane Helix	223	248	0.87
Non-Cytoplasmic	249	268	0.76
Transmembrane Helix	269	291	0.91
Cytoplasmic	292	304	0.76