YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149950530, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKYILRRLL YLIPVILGVS LIVFTMMYFT PGDPARIMLG ESAPDEEVAR MRESLGLDDP  60
   61 YVVQFGRYVK NAVVHQDIGR SYRTGRPVAE EVLTRFPATL KLAAAGVFVA VVIGIPIGII 120
  121 SATKQYSLFD NVAMIFALMG VSMPNFWQGM MGILIFSVYL GWFPSSGFST FRHLILPATT 180
  181 IGTSSAAIIT RMTRSSMLEV VRQDYIRTAR AKGQAESVVI NQHALKNALI PIITVIGLQF 240
  241 GYLLGGAVLT ESIFSIPGVG KLMVDSILTR DFPVVQGGVL FIAVTFSMVN LVVDILYAYV 300
  301 DPRIKSQYK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	101	0.97
Transmembrane Helix	102	122	0.93
Cytoplasmic	123	131	0.80
Transmembrane Helix	132	156	0.75
Non-Cytoplasmic	157	170	0.70
Transmembrane Helix	171	192	0.88
Cytoplasmic	193	228	0.96
Transmembrane Helix	229	250	0.84
Non-Cytoplasmic	251	276	0.83
Transmembrane Helix	277	300	0.88
Cytoplasmic	301	309	0.97