YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77635439
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGELRESVR YTIKIGNFNY AAQFPNSKQL HKFGVAQLNV TVSQLAEKWL ALKVMEITKN  60
   61 GISRYRSYIK ICAGIIGEER LVSSITNEMV LSLRKELLTG FQIAGVHQKT RQLKKGRSVR 120
  121 TVNVYLSCFA AMMEFAVANG YIERSPFVGI SPLKKSKSEP DPLTRDEYAR LMEVAPSLQV 180
  181 KNIWKLAVST GMRHGEICAL AWEDIDLKEW TITISRNMAV VHHFTPPKTE SGNRTIKLTN 240
  241 SAIEALKEQM ALTKMGKKIK VDVHLREFGK IRKDDCTFVF SPRLSARNGK GGDWYSPGVF 300
  301 SGTWNFALKK AGIRHRKAYE TRHTFACWAL SAGANPNFVA NQMGHTSSQM VYSVYGKWMS 360
  361 ENNSNQMDIL NARFTGDAPY MPRAISQ

Type	Start	End	Confidence
Cytoplasmic	1	120	0.55
Transmembrane Helix	121	142	0.50
Non-Cytoplasmic	143	387	0.98