YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|166212449, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDLRLILIV VGAIAIIALL LHGLWTSRKE RSSLFRDRPV KRTKQERVET PIESLDEGVG  60
   61 EVRVRTSHPQ EKPSFNHLDD DDDEVPVIQH AETKSAQVKT ASRQAPFASV QTDYDDPLLG 120
  121 GLSAEQPPHD LSRDPLLGKA DESYSQPQHA EPPHVEKPAH QVAPQQHVES QQEPVAPAPE 180
  181 AKPQKLKETV LVLHVAAHHG GVIGGEVLLQ SVLQSGFQFG EMGIFHRHLS PAGSGPVLFS 240
  241 LANMVKPGSF DPDTMSDFST PGVSMFMMVP SYGDANQNFK LMLQSAQRIA DDVGGVVLDD 300
  301 ERRMMTPQKL ESYKARIREV LDANTIA

Type	Start	End	Confidence
Cytoplasmic	1	5	0.72
Transmembrane Helix	6	26	0.90
Non-Cytoplasmic	27	327	0.82