YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145209983, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKDMLQFL NRCSRGRGAW LLMALTAFLL ELTALYFQHI MLLQPCVMCI YERVALFGIL  60
   61 GASLLGAIAP RSPLRYLAIA VWIYSAWKGV QLAWAHTMLQ LNPSPFNTCD FFVNFPSWLP 120
  121 LDKWLPAVFA ASGDCSERQW QFMSLEMPQW LVGIFAAYLV IAVLVLISQF VKPKRRDLFG 180
  181 R

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	40	0.92
Non-Cytoplasmic	41	48	0.81
Transmembrane Helix	49	69	0.91
Cytoplasmic	70	75	0.84
Transmembrane Helix	76	97	0.85
Non-Cytoplasmic	98	149	0.95
Transmembrane Helix	150	171	0.94
Cytoplasmic	172	181	0.96