YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117607304, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	26	0.59
Non-Cytoplasmic	27	30	0.38
Transmembrane Helix	31	47	0.64
Cytoplasmic	48	51	0.61
Transmembrane Helix	52	69	0.85
Non-Cytoplasmic	70	87	0.62
Transmembrane Helix	88	111	0.75
Cytoplasmic	112	119	0.84
Transmembrane Helix	120	143	0.92
Non-Cytoplasmic	144	155	0.83
Transmembrane Helix	156	180	0.83
Cytoplasmic	181	191	0.89
Transmembrane Helix	192	211	0.94
Non-Cytoplasmic	212	230	0.65
Transmembrane Helix	231	255	0.75
Cytoplasmic	256	267	0.61
Transmembrane Helix	268	287	0.82
Non-Cytoplasmic	288	1116	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLNEILMV AVVYFITARL GQLLAISPGN VTPVWLPSGI CLAWVLLRGR HLWPGIFLGA  60
   61 FAGNIWAYFD TNTLSAILKS ILAGSANGLG DVIAIVGAAW MINTISPATA LFNNSKNTTI 120
  121 FLIYGGIIGP FISASIGIFG LLLTGNILPN DAFFSLITWW TGDAMGVLFI TPVILELYHL 180
  181 KNIQTIRPNR DVILHFVLFL SITTTVFFLS SNQDPSIWIV FLAPMLVWAT LRFSQVILFS 240
  241 ELFILSTISI VATATQHGPL LILDDLASTL IHLQVFLGSV ALSVFYLNSV NRELRASKHN 300
  301 LELNVIERTK DLQVLNSNLL KEIRSRQHAE DSLKESQKAL LEAQNIAQVG NWTWTIETNT 360
  361 LSWTDEIYRI FGLIPQETPP TYQAFLSAIH PEDRLFVQNA VNQALEQLNT PYQVEHRIIR 420
  421 PNGDLRTVVE LGRVERDQQG TPFRMIGTVQ DITARKQTEA LLLSSEIRFR SLFDSMNEGG 480
  481 ALHAMVFNEH GNPIDYRILE VNKAYTEILG ITKEQAEGRL ATEIYGQTSP PYLELYNRVV 540
  541 KTGQSLRFET EYSPMVRNFE ISVFSPGENQ FATVFTDITE RKKTLQKLNG ALDELEKKSN 600
  601 FLQSLVQNLP DLIWMKDPEG VFLTCNPAFE RFVGSQEQQI KGKTDYDFVD QKLADFFRMN 660
  661 DLLAIEKGGP VINQEWVTFA ADGHKALLET TKTPMFDKQG RIIGVLGVAH DITATKQAEQ 720
  721 DLIHAKEKAE AAYQAKSEFL ATMSHEIRTP MNVIIGLSDI LMETPIDHEQ RDHLLRLQKA 780
  781 NKTLLDLVDS ILDLSRIEAN QISLKQEPLN LALMVEETMS MMSIVADQKG LRLESQVTQA 840
  841 TDDYWSLGDE SRIRQILVNL IGNAVKFTEK GSIWVTLELF TDTLERTLVR LCVKDTGIGI 900
  901 GPEHLETIFD KFTQVDSSYA RRYSGTGLGL AITRRIIQLM GGKVWVESNP SQGSLFCVEL 960
  961 PFIPVQPIAL KEDTTLQNDV NRSTNRPLRI LLAEDSEDNQ MLVQTYLRRT HHELVIVMDG1020
 1021 QQAVDAACSK PFDLILMDIQ MPIMDGYQAT GIIRDDQHRH NKPHTPILAL TAHALDEDVA1080
 1081 KSLAAGCDGH LTKPIRKAKF LQCIERYQPI TFLDES