YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77634092
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNNPQPTAQ TTQQTTNTAT GDKASQAVPG SGQGQLITVK TDVLSLTINT RGGDIEQANL  60
   61 LAYPDTLGSS NTFELLETTP SFVYQAQSGL TGKNGPDNPA NGDRPLFEVP QTSFVLADGQ 120
  121 DELRIPLTFT SKDGSVFIKT FVLKRNDYAI GVDYHVNNAS AAPLELTLFG QLKQSINLPK 180
  181 KRDTGSNNFA LQTYRGAAYS SDETKYKKYS FSDIEDKNLD ITTKGGWVAM LQQYFATAWI 240
  241 PAANETNTFY SAELGNGLAA IGFKGAPVVI QPGEQKQLSA TLWVGPEIQN KMAEIAPHLD 300
  301 LTVDYGWLWF ISQPLFKLLK FIHSFVGNWG FSIIVITFIV RGIMYPLTKA QYTSMAKMRL 360
  361 LQPKLAAMRE RIGDDKQRMS QEMMALYKAE KVNPLGGCLP LIIQMPIFLA LYYMLMSSVE 420
  421 LRHAPFILWI HDLSAQDPYY ILPILMGITM YFIQKMSPTT VTDPMQQKIM TFMPVIFTVF 480
  481 FLWFPAGLVL YYIVSNLVTI LQQQLIYRGL EKRGLHSREK KK

Type	Start	End	Confidence
Non-Cytoplasmic	1	320	0.92
Transmembrane Helix	321	345	0.84
Cytoplasmic	346	392	0.94
Transmembrane Helix	393	416	0.87
Non-Cytoplasmic	417	435	0.89
Transmembrane Helix	436	454	0.89
Cytoplasmic	455	471	0.82
Transmembrane Helix	472	494	0.91
Non-Cytoplasmic	495	522	0.88