YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117672744, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIPVVIGA LFLLPPVGFA IVTLVVCMLA AWEWGQLAGF ASRTQRIWLA ILCGFLLVAM  60
   61 LLSLPEYQHS PHHLLVSTPL WLSMGWWVAA LMLVLTYPRS AVSWRNSRLL RIIFGILTII 120
  121 PFFWGMFALR QYGYEQNHNT GAWWLLYVML LVWGADSGAY MFGKLFGKHK LAPKVSPGKT 180
  181 WEGLIGGLLT SALISLLFGR YAPLDIVPEK LLICSVVAAL ASVLGDLTES MFKREAGIKD 240
  241 SGHLIPGHGG ILDRIDSLTA AVPVFACLML LVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	32	0.86
Cytoplasmic	33	46	0.83
Transmembrane Helix	47	65	0.96
Non-Cytoplasmic	66	76	0.78
Transmembrane Helix	77	97	0.89
Cytoplasmic	98	108	0.84
Transmembrane Helix	109	128	0.94
Non-Cytoplasmic	129	142	0.81
Transmembrane Helix	143	163	0.94
Cytoplasmic	164	180	0.89
Transmembrane Helix	181	202	0.89
Non-Cytoplasmic	203	210	0.72
Transmembrane Helix	211	228	0.82
Cytoplasmic	229	251	0.78
Transmembrane Helix	252	272	0.52
Non-Cytoplasmic	273	273	0.50