YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152959614, gi...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWWRFSPRS SFARTLLLIV TLLFVSLVTT YLVVLNFAIL PSLQQFNKVL AYEVRMLMTD  60
   61 RLQLEDGTLL EVPPAFRREI YRELGISLYT NAAAEESGLR WAQHYKFLSD QMAQQLGGPT 120
  121 DVRVEVNKNS PVVWLKTWLS PDIWVRVPLT EIHQGDFSPL FRYTLAIMLL AVGGAWLFIR 180
  181 IQNRPLVELE HAALQVGKGN IPPPLREYGA SEVRSVTRAF NQMAAGVKLL SDDRTLLMAG 240
  241 VSHDLRTPLT RIRLATEMMS EDDGYLSESI NKDIEECNAI IEQFIDYLRT GQEMPTESSD 300
  301 LNSVLGEVIA AESGYERVIE TDLAEGEVLV DIHPLSIKRA LTNMVVNAAR YGNGWIKVSS 360
  361 GKELQRAWFQ VEDDGPGIKP EDLKHLLQPF VRGDSARSTS GTGLGLAIVQ RIIDAHAGSL 420
  421 EIGTSKRGGL RIRAYIPLPL DVKPKPPAVA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.55
Transmembrane Helix	16	35	0.64
Non-Cytoplasmic	36	159	0.92
Transmembrane Helix	160	179	0.60
Cytoplasmic	180	450	0.56