YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77630982, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.74
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	32	0.65
Transmembrane Helix	33	55	0.85
Non-Cytoplasmic	56	70	0.61
Transmembrane Helix	71	93	0.84
Cytoplasmic	94	110	0.74
Transmembrane Helix	111	135	0.85
Non-Cytoplasmic	136	154	0.70
Transmembrane Helix	155	175	0.45
Cytoplasmic	176	194	0.50
Transmembrane Helix	195	216	0.82
Non-Cytoplasmic	217	223	0.53
Transmembrane Helix	224	245	0.81
Cytoplasmic	246	250	0.53
Transmembrane Helix	251	277	0.80
Non-Cytoplasmic	278	292	0.50
Transmembrane Helix	293	316	0.89
Cytoplasmic	317	624	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMPNIGAFI AWGIITALFI PTGWLPNETL AKLVGPMITY LLPLLIGFTG GRLVGGDRGG  60
   61 VVGAITTMGV IVGADMPMFL GAMIVGPLGG WAIKHFDRWV EGKIKSGFEM LVNNFSSGII 120
  121 GMLLALLAFM AIGPLVEVLS KGLAYGVDVM VQNNLLPLAS IFVEPAKILF LNNAINHGIF 180
  181 SPLGVQQAAE TGKSIFFLIE ANPGPGLGVL MAYMFFGKGN AKQSAGGAAI IHFFGGIHEI 240
  241 YFPYVLMNPR LLLAVILGGM TGVFTLTLLN GGLVSAASPG SILAILAMTP KGAYFANIAA 300
  301 VATAFAVSFV VSAILLKSSK AKDDEEGLEG ATRRMQDMKA QSKGVQAANA AAAAGDLSTV 360
  361 RKIIVACDAG MGSSAMGAGV LRKKVQDAGL KHIAVTNCAI NNLPEDVDLV ITHRDLTERA 420
  421 MRHAPQAQHI SLTNFLDSQL YNSLTAELLQ ASQLVDNTKV QKVIEKLDDS FEAFEDNLFK 480
  481 LGAENIFLNQ HATAKEQAIR FAGEQLVKGG YVEPEYVEAM LDREKLSSTY LGESIAVPHG 540
  541 TIEAKDRVLK TGVVFCQYPE GVRFGDEEDD IARLVIGIAA RNNEHIQVIT SLTNALDDDS 600
  601 VIARLSKTTS VQEVLDLLGG KTSA