YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186896304, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANMFALILA IATLLTGIIW CFERFKWGPA RQAKIAAVNA QTAEIKAQTG CAVDNKTLAQ  60
   61 AAKQPGWIET CASIFPVLAL VFIVRSFVYE PFQIPSGSMM PTLLIGDFIL VEKFAYGIKD 120
  121 PITQTTLIPT GKPNRGDIAV FKYPLDPRLD YIKRVVGLPG DRVIYNPISK EVTVQPSCNT 180
  181 GTSCDSALAI TYSTSEPSEF VQTFRYSGNG ESSAGFFPIP LNQAVPDGGV RLRERTESLG 240
  241 PVAHHILTVP GRQDPLGSYY QQPDQPLGVW VVPEGHYFMM GDNRDNSADS RFWGFVPERN 300
  301 LVGKATAIWM SFEKQEGEWP TGVRLSRIGG IH

Type	Start	End	Confidence
Signal Peptide	1	21	0.53
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	332	0.82