YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152961936, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDVLNGNVG INQLKPQHEY FDAIGLGKVL SENTQYHAVL TLAEAKSIIE DINPPRTQSP  60
   61 SNGEALARGF EIGNKVTNPV ARVFSVTDPI SAYAGNIYDS RGVYDVIREF KRFSITATEY 120
  121 VGENGRKYIH ISGYAGLRRI ITGTRYGASH PQMLSMGIGQ QGLSSNIVKG LKFCILFSIG 180
  181 YRTIEGIFKD EYTLAEFIGN ITMDMAKTAI VAAVSFIVGV LFTATVLAGG SIIVVAGVVF 240
  241 AVGFVATAIL DHFDEKYGIS EKLIALLTKE MRKKPRTQEA NFQSILNGLG RLK

Type	Start	End	Confidence
Cytoplasmic	1	207	0.93
Transmembrane Helix	208	227	0.87
Non-Cytoplasmic	228	231	0.60
Transmembrane Helix	232	253	0.85
Cytoplasmic	254	293	0.85