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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68197777, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAARGGAT ARVRRRTTAA RRGADDPRRR LVTGRNPFRR HRLAAAALLG TVALVWPGAD  60
   61 VGLAAAPPDG ARAPAATSIT STTLDSHNPQ ASSTVSTGLS TELSTGSASS VGISPDSAAI 120
  121 IQPITRTNPS TSGTSGTQQT TPSTGGTTNG TTGLPIEVRL TSLVTPSAAA PQLRVTGTVD 180
  181 VGGTVLPTDL GVVLEVGGPL RSRGELAQLT SGGPPPQIRY SLLGSGPLTI SPTATTPGQF 240
  241 AAQADVPAMF RSSAVSVRPV QIRIVGRVGE RARSTVASLT TFIVVSPPQA AARTAVVTVL 300
  301 PVSSKPRLRS DGLLTDDTLT DEIRDGGRLD ALLDPLESTA PGTPPPQVAL AVDPTLVQAL 360
  361 QRMETPYQYA TPGGRRNADP DPDAGAFLDR IKDFARRGGT VIALPYGDTD LPALVRADQL 420
  421 DALQYSVNTG QLVIAGLLGG KIPRSGTIAY PADGIADPHT VDVLSANGAG TVIVDDRLLP 480
  481 AAQSVRYTPS AAVTLPTSTG QVRVLAADHR LADAVAGYDG QQLLEQALAR FRAELAMITA 540
  541 EPANERAAVL ALPRDFTPPP GWLNAILRSL DSAYSRPVGI EEPSPDATRQ RAGLTYNADA 600
  601 QSRELPVDYV KGVGQIRGEV AVLSAAFCPP TTLTGDLLQQ CRLGKVDPMR NTLITALSAW 660
  661 WRTDRLGGFS LAQQADGQVG DYRSKIRVVA SRIVNLTSSR GRVPVTLENG SDWNVTVVLK 720
  721 LSSTDRGRLV SATEVTRVLE PLQKDQFEIE VDAESAGTFP VDIRLETVDG QALGPDAAAR 780
  781 VLVRSTVYGA IATAITIGAI GVLMLAVLIR LLRKLRARSR GGSAADAAAA APPDGSGPPA 840
  841 GAGLLGPAGA NGASGAGDPD HPGTGDGPFD PPGTAGPGLA GAARRRSRAG RPRARSLLRR 900
  901 TTRARRVPGA HRLAVRPVHR WSRRQDGRAV VRASRDPGRI RVPAAATGRP VTPPDESRWP 960
  961 PDDDRHGTRD GQGTPRYPDD RYPDERYPDD RYPDRRYPDE RYADGGYAGG QDGGRYAGGS1020
 1021 YPDDSYAHDQ RRDVGYDNGY PGGYPEDRHD GRRPEERYEG GARPDGRYDS GGYPANPESR1080
 1081 YGDGGYDDRP YRDSPYPDDR YADAGEPHRP GSPFPDADEH PARYRPNVNR PAQDPPAPWG1140
 1141 DPEPPSDRPP GPPPYEPARH EWDPRDGGPR HDRSRARYDD PPYDQPQYDG PPYGDRRYDA1200
 1201 RDEARYDDSR YGTPGQPPPY EERPDRGGEP PAWYADGSHA TARVPTDSAY PDTPPPVPGR1260
 1261 RRSDPDDPYD AAPHPTGPRR ADPNAGMSPQ SYQEGGAEIG RRPAGGRPPA GEQTRRLPSA1320
 1321 PAVPPPSEGG PAMWSSRSRT PAPGAAPRAG AGSARRTRPP VEPLDGPHVE PLVEPLDEVA1380
 1381 ADDRTSRLAP PVTPPPASTR RPAAEGARPA GRRPAAGKQA TGRPATGKQA AGKQASGAAR1440
 1441 GAATAKRGGL GRASGTMAIG TIVSRASGFL RTVAIAAAIG TGAVGQAYNV ANTTPNILYD1500
 1501 LLLGGILTSV IVPVLVQASK EDPDGGDSFA SSLLTLMVLG LGAAVVVGMF AAPQIIGLYL1560
 1561 NAGPAQRALG ADMLRWFMPQ ILFYGVGATL GAILNTRQSF AAPMFAPVLN NLVVIATCVV1620
 1621 FIFLPGPRPP TLDGITDAQT VVLAGGTTLG VVVMTIALLP SVRAVGFRYR PRLDLRHPGL1680
 1681 RSASRLAGWT LLYVMVSQLG FMMISRLSTS TTAYSIYSFA YQIFQLPYAI IGVSVITALL1740
 1741 PRMSSHAASD QADLVREDLS TASRMTVTAI IPSALFLLAL GRPIAVTVFN HGAVDYDDAI1800
 1801 AIGDTLSAFA IALVPFSLFQ VQLRAFYAYR DSRTPALVNI GVVATNVLAA FVLSEVVAEK1860
 1861 HRAAALALAF SLAYLIGLMA TTVLLRRRLR GIDGNRIARV TTRVSVTAGV GAVLASVIAD1920
 1921 GLRDLLGKGW LGSGIAVVLA LVVGGLVFVV ISVRTGMHEM TALMRIVGGR LGVGRRTKPA1980
 1981 GAGASASAGT GTGAASASSA RPPRSAGRGD SGRGRPPGGR GDRGGRGGPS GRPGGPPGRR2040
 2041 GGSSGRRG

YRC Informatics Platform - Version 3.0
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