YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|158108181, gi...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPPLVSPA EGLTVDEVRR YSRHLIIPDV AMDGQKRLKN AKVLAVGAGG LGSPTLMYLA  60
   61 AAGVGTLGIV EFDVVDESNL QRQIIHGQSD VGRSKAESAR DSVREINPLV NVVIHETRLD 120
  121 TSNVMEIFAQ YDLIVDGTDN FATRYLVNDA CVLLGKPYVW GSIYRFDGQA SVFWAEHGPC 180
  181 YRCLYPEPPP PGMVPSCAEG GVLGVLCASI GSIQTTEAIK VLTGVGDPLV GRLMVYDALE 240
  241 MSYRTIKVRK DPECPLCGKN PSITELIDYE AFCGVVSEEA QLAAAGSTIT AAELRTMLDG 300
  301 GEPIELIDVR EPAEWEIVRI PGARLIPKGE LPAHLAELPQ DRRVVVYCKS GVRSAEALAT 360
  361 LKGAGFATAV HVQGGVTAWA TQVDKTLPVY

Type	Start	End	Confidence
Cytoplasmic	1	42	0.61
Transmembrane Helix	43	62	0.55
Non-Cytoplasmic	63	390	0.96