YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68202151, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	240	0.85
Transmembrane Helix	241	261	0.83
Non-Cytoplasmic	262	267	0.82
Transmembrane Helix	268	292	0.88
Cytoplasmic	293	312	0.89
Transmembrane Helix	313	335	0.82
Non-Cytoplasmic	336	339	0.65
Transmembrane Helix	340	360	0.90
Cytoplasmic	361	366	0.89
Transmembrane Helix	367	386	0.92
Non-Cytoplasmic	387	391	0.72
Transmembrane Helix	392	412	0.88
Cytoplasmic	413	420	0.75
Transmembrane Helix	421	443	0.71
Non-Cytoplasmic	444	455	0.65
Transmembrane Helix	456	478	0.89
Cytoplasmic	479	497	0.91
Transmembrane Helix	498	518	0.95
Non-Cytoplasmic	519	519	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPEWHTGN VPKNTGFPLA CRRPPRQPTS PGRGRRRHQP TAAGGGDARS LRTASPAPPV  60
   61 DGAHTRGADP VGTQPTRTAR LPAARLRHVV EHHPRPLLGA VPRGSLDDRA DREVVLSPEA 120
  121 VVRHRQGLPR RPVTSSGGRP ATAGPAPRAI PAAGTGQPPS AAVTSAAVPV PAVGGLPVGG 180
  181 LPVGGLPVSG LPVRGAVSDP GGVSAAVAAP AAGAEPSSDP LVVPRGRLAR ATDRARSYIA 240
  241 LMKLRVVELL LVSTVPVMLL AERGMPSWWL IAVTLLAGTL SAGSANTINC YVDRDIDQLM 300
  301 GRTKRRPLVR EVVEPAQALR FGIALGIIST LMFGLLVNWT SAVLSVGAIA FYVFVYTLGL 360
  361 KRRSPSNIVI GGAAGCFPVL IGWSAVTGTV GWPAVLLFAV VFFWTPPHFW ALAIRFKDDY 420
  421 AAAGVPMLPV VATLEVVTRR ILAYSYLMVA VSLAVAPVAD IGLVYLVPAV LLGAWFVAEA 480
  481 HRMAARAKRG EEIKPMRLFH MSITYLTLLF AALAAAALL