YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68202954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFASNTLA LGPDFISADS LAKAGLVVVL LIVFAESGLL VGFFLPGDSL LFTLGLLISQ  60
   61 DEVSTPLWLA CALIGVAAVA GDQVGYLFGR KAGPALFRRP DSRLFRQEYV DQAHEFFEKH 120
  121 GGRSIVLARF VPIVRTFTPV IAGVSRMNYR TFVVYNVIGG LLWGCGVTVL GSLLGKIDFI 180
  181 RQNLEAMLIL IVLISVVPIL IEYLRARRTK ATTGDAAGSP DATNAAGTGP AGPAAGHGPA 240
  241 WVDGPVREHD RAPGAGFAGG YESTGGYQPA GGYQGGYQPV DVYQSADGYR NADGWQPESR 300
  301 YDDGRYDQPR AGTAGAAGHG GHGYDTEGFQ DARPREGEAP IQEERGPAGR RGGGGRHSAP 360
  361 RHR

Type	Start	End	Confidence
Cytoplasmic	1	23	0.91
Transmembrane Helix	24	45	0.92
Non-Cytoplasmic	46	65	0.87
Transmembrane Helix	66	89	0.92
Cytoplasmic	90	151	0.93
Transmembrane Helix	152	174	0.93
Non-Cytoplasmic	175	183	0.72
Transmembrane Helix	184	204	0.90
Cytoplasmic	205	363	0.89