YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91776320, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPRCFTALF PLALLCLPLL GHAAEPGGLG LINSQPAPGG GQNYSLSIQT LILLTSLTFL  60
   61 PAALLMMTGF TRIIIVLSLL RQALGTQSSP PNQVLVGLAL FLTFFVMGPV FERIYTEAYQ 120
  121 PFDEERITMQ EAMVRGSIPL KEFMLKQTRE SDLALFFKMS RADAVATPEE VPLRVLVPAF 180
  181 VTSELKTAFQ IGFAIFIPFL IIDMVVASIL MSMGMMMVSP AIVALPFKLM LFVLVDGWQL 240
  241 LLGSLAQSFY

Type	Start	End	Confidence
Signal Peptide	1	23	0.94
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	50	0.93
Transmembrane Helix	51	76	0.81
Cytoplasmic	77	91	0.84
Transmembrane Helix	92	111	0.88
Non-Cytoplasmic	112	187	0.93
Transmembrane Helix	188	211	0.84
Cytoplasmic	212	220	0.61
Transmembrane Helix	221	242	0.79
Non-Cytoplasmic	243	250	0.72