YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68185993, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	60	0.93
Non-Cytoplasmic	61	68	0.75
Transmembrane Helix	69	88	0.66
Cytoplasmic	89	99	0.59
Transmembrane Helix	100	121	0.94
Non-Cytoplasmic	122	128	0.68
Transmembrane Helix	129	151	0.88
Cytoplasmic	152	156	0.56
Transmembrane Helix	157	179	0.87
Non-Cytoplasmic	180	186	0.64
Transmembrane Helix	187	208	0.85
Cytoplasmic	209	227	0.77
Transmembrane Helix	228	249	0.93
Non-Cytoplasmic	250	279	0.82
Transmembrane Helix	280	303	0.89
Cytoplasmic	304	316	0.75
Transmembrane Helix	317	337	0.87
Non-Cytoplasmic	338	344	0.74
Transmembrane Helix	345	365	0.94
Cytoplasmic	366	373	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNPFKKQQN IKSENIESSG TNKNTPAREG YQRYVGKKLF FLISMLVLVI FLSAFIVTIG  60
   61 PLEISVAEVY KILLSSLFPG YFTNEGLTSQ IVWNIRLPRI IAGIMAGFGL GVCGCVMQAV 120
  121 LKNPLASPFT LGISSGANFG VAVAAVMGVG VIGGPYLLVG NAFLFSMLCA LFIIALANFK 180
  181 GATSETLILA GIAINYLFSS LSDLFRYFAT DEQLRIMVSW GMGDLSAFSW SNFSILLGVF 240
  241 VFCTPLLYLK ANDLNIMAIG DENAKSLGID TNRVRMFTML LASLLIATVV CFTGTIAFIG 300
  301 LVAPHMARMV VGSDHKYLFP ASGILGALIL ISADATGLNI LRPTMIPTGI MTSLLGVPFF 360
  361 MYLILKKKKK EFW